Questions tagged [rstudio]

RStudio is a free and open-source integrated development environment for R in Linux, Windows and Mac.

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Error RcppTOML when installing keras on Rstudio linux centos 7

I am trying to install keras on rstudio on my Linux Centos 7 but when it is compliling, I have this error: ERROR: compilation failed for package ‘RcppTOML’ * removing ‘/home/rico/R/x86_64-redhat-linux-...
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Rstudio GLIBCXX_3.4.26 dependency

I have installed the R package metaboliteIDmapping using: if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("...
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4 answers
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Restrict users from storing in home directory in Linux

We have a RHEL server where multiple users have access to it through application. Application RStudio running on these servers default the workspace to the users /home folder. Though there is separate ...
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Rstudio fails to be displayed on my laptop (client) when trying to X11 forwarding from my Imac (server) at home

I am trying to display Rstudio on my laptop (where I have Ubuntu 18.04.5 LTS) using X11 forwarding with ssh to connect to my Imac at home. I set up all the files (ssh_config and sshd_config) on my ...
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R packages won't install on conda R environment

I am trying to install an R package to an R environment created through conda on an HPC Server where I am doing some bioinformatics. I tried to run the usual R command (which works and install the ...
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1 answer
2k views

Copy & Paste unusable in KVM virtual machine (Ubuntu) when RStudio is running

Setup: Fedora 30 with a KVM/qemu virtual machine running Ubuntu 18.04.1. (This setup because I want to run RStudio and on my Fedora 30, and it just barfs & dies immediately somewhere in the ...
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-1 votes
1 answer
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What is the best way to get the latest version of R? [closed]

A lot of instructions that I find on here give instructions about how to install the latest version of R that either deliver an out of date version, or are very OS-dependent. I just bought a System76 ...
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1 answer
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ulimit - one service affects another

We are hosting 2 services on our RHEL 7.4 server: Jupyterlab and RStudio. Jupyterlab sessions of individual users tend to open a lot of files: # lsof|grep e613664|wc -l 31581 Our problem is that the ...
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1 vote
1 answer
306 views

Error when editing sources.list while installing RStudio on Chromebook Linux (beta)

I am following this great guide for installing RStudio on a Chromebook using Linux (beta). I am using a 2017 Samsung Chromebook 3 (XE500C13K). After appending the /etc/apt/sources.list file with deb ...
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2 votes
1 answer
1k views

Give a user permissions to start, stop or restart shiny-server

I need to give permission to a user to start, stop and restart Rstudio's shiny-server. Right now, I have been managing the service upon this user's request with sudo service restart shiny-server, but ...
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1 vote
0 answers
413 views

Unable to install deb package - Operation Not Permitted

I'm running Ubuntu 18.04. After installing the requirements and downloading the package, I cannot install rstudio. Downloads $ sudo gdebi -n rstudio-xenial-1.1.419-amd64.deb Reading package lists... ...
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Can't open RStudio thru x2go

I have two computers on two different networks, which I will call Server and Client. Server and Client both run Debian 9.5 and have x2go installed. When I'm on Client machine, I use x2go to connect ...
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Install libicui18n locally on CentOS

I tried installing Seurat package in Rstudio, in a markdown file and apparently I need to install libicui18n locally on CentOS for it to work: https://bioinformatics.stackexchange.com/questions/4148/...
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1 vote
1 answer
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Cannot download packages on R (neither RStudio nor Terminal)

I'm very new to linux, my only experience being using a computer that belonged to somebody else before, meaning that everything was already configured/downloaded and I had no problem doing my job on ...
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Is it possible to build and use libpam in building rstudio server without a root?

I need to build an RStudio server for my account on HPC. RStudio is not provided by the system, and I have no root privileges (and there is no support for docker/singularity). One of the ...
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458 views

How to increase memory limit and number of cores that Rstudio uses on a cluster

I launched Rstudio using FastX on Rivanna cluster (CentOS Linux release 7.3.1611 (Core)): https://arcs.virginia.edu/rivanna The main goal for doing that was to significantly increase the speed of ...
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2 votes
3 answers
419 views

PAM Kerberos and RStudio

I am trying to get Kerberos PAM to pull a ticket and not destroy it after an RStudio login on CentOS 7. My rstudio file in /etc/pam.d/ looks like: #%PAM-1.0 auth required pam_krb5....
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2 answers
12k views

Install R on Linux Mint 18.2 Sonya Mate

I tried to install R on Mint without success. Here are instructions, that I already tried to follow on YouTube: sudo apt-get install r-base [sudo] password for xwing: Reading package lists... Done ...
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1 answer
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Why RStudio source pdf output difference with R prompt?

I get correct output of the following code for Rscript code.r but damaged file when running RStudio source in the minimal project, which I do not understand. Code pdf("test.pdf") plot(iris) There ...
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6 votes
3 answers
4k views

Debian 9 and RStudio

I just switched to Debian following the recent release of version 9. I do a lot of work with RStudio and thus tried to install the stable and testing versions which both failed due to the missing ...
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3 votes
0 answers
154 views

Using ack to effectively search and RStudio project directory

I'm interested in running ack search on a RStudio project directory that mostly contains *.R script files but also some project files and often *.git files. Directory The project folder structure ...
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