Questions tagged [rstudio]
RStudio is a free and open-source integrated development environment for R in Linux, Windows and Mac.
26
questions
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Error installing rstudio-desktop package on Arch
When I run yay -R rstudio-desktop in terminal, the installer goes for a while before hitting this error and exiting.
Buildfile: /var/tmp/pamac-build-myusername/rstudio-desktop/src/rstudio-2023.03.2-...
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votes
1
answer
165
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How can I set a font in a bash --x11 script?
#!/bin/bash
module load rstudio
srun -p interactive -N 1 --cpus-per-task=8 --time=4:00:00 --mem=80gb --job-name="RS_job" --x11 rstudio
A simple bash to bring up an interactive node but ...
- 101
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votes
1
answer
599
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Package 'libclang-dev' has no installation candidate
Trying to install libclang-dev using these instructions. But, I run into this error.
sudo apt-get update
sudo apt-get -y install libclang-dev
Reading package lists... Done
Building dependency tree... ...
- 1,229
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41
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object of type 'closure' is not subsettable error in R
Here's my code
tapply(data$/AverageCoverage, eccle$locus, summary)
I'm not sure how to fix this
1
vote
1
answer
74
views
Rstudio running very slow on PopOS Surface Go 2
I've recently got into Linux (and really like it!) but my RStudio runs extremely slow even when no packages are loaded (just basic interactions).
I've done the usual trouble shooting techniques of ...
- 111
2
votes
0
answers
267
views
Unable to install "tidyverse" in R or Rstudio without running into errors and/or non-zero exit status
I've been having troubles with installing the tidyverse package in Rstudio and more recently when reinstalling R. I'll post my most recent error message when reinstalling R below after system info.
My ...
2
votes
0
answers
709
views
Error RcppTOML when installing keras on Rstudio linux centos 7
I am trying to install keras on rstudio on my Linux Centos 7 but when it is compliling, I have this error:
ERROR: compilation failed for package ‘RcppTOML’
* removing ‘/home/rico/R/x86_64-redhat-linux-...
- 185
0
votes
4
answers
741
views
Restrict users from storing in home directory in Linux
We have a RHEL server where multiple users have access to it through application. Application RStudio running on these servers default the workspace to the users /home folder. Though there is separate ...
- 101
0
votes
0
answers
207
views
Rstudio fails to be displayed on my laptop (client) when trying to X11 forwarding from my Imac (server) at home
I am trying to display Rstudio on my laptop (where I have Ubuntu 18.04.5 LTS) using X11 forwarding with ssh to connect to my Imac at home.
I set up all the files (ssh_config and sshd_config) on my ...
0
votes
1
answer
955
views
R packages won't install on conda R environment
I am trying to install an R package to an R environment created through conda on an HPC Server where I am doing some bioinformatics. I tried to run the usual R command (which works and install the ...
1
vote
1
answer
2k
views
Copy & Paste unusable in KVM virtual machine (Ubuntu) when RStudio is running
Setup:
Fedora 30 with a KVM/qemu virtual machine running Ubuntu 18.04.1.
(This setup because I want to run RStudio and on my Fedora 30, and it just barfs & dies immediately somewhere in the ...
- 1,371
-1
votes
1
answer
42
views
What is the best way to get the latest version of R? [closed]
A lot of instructions that I find on here give instructions about how to install the latest version of R that either deliver an out of date version, or are very OS-dependent. I just bought a System76 ...
- 215
0
votes
1
answer
259
views
ulimit - one service affects another
We are hosting 2 services on our RHEL 7.4 server: Jupyterlab and RStudio. Jupyterlab sessions of individual users tend to open a lot of files:
# lsof|grep e613664|wc -l
31581
Our problem is that the ...
- 101
1
vote
1
answer
344
views
Error when editing sources.list while installing RStudio on Chromebook Linux (beta)
I am following this great guide for installing RStudio on a Chromebook using Linux (beta). I am using a 2017 Samsung Chromebook 3 (XE500C13K). After appending the /etc/apt/sources.list file with deb ...
- 35
2
votes
1
answer
1k
views
Give a user permissions to start, stop or restart shiny-server
I need to give permission to a user to start, stop and restart Rstudio's shiny-server.
Right now, I have been managing the service upon this user's request with sudo service restart shiny-server, but ...
1
vote
0
answers
509
views
Unable to install deb package - Operation Not Permitted
I'm running Ubuntu 18.04. After installing the requirements and downloading the package, I cannot install rstudio.
Downloads $ sudo gdebi -n rstudio-xenial-1.1.419-amd64.deb
Reading package lists... ...
- 375
0
votes
1
answer
337
views
Can't open RStudio thru x2go
I have two computers on two different networks, which I will call Server and Client. Server and Client both run Debian 9.5 and have x2go installed.
When I'm on Client machine, I use x2go to connect ...
- 801
0
votes
1
answer
4k
views
Install libicui18n locally on CentOS
I tried installing Seurat package in Rstudio, in a markdown file and apparently I need to install libicui18n locally on CentOS for it to work:
https://bioinformatics.stackexchange.com/questions/4148/...
- 121
1
vote
1
answer
1k
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Cannot download packages on R (neither RStudio nor Terminal)
I'm very new to linux, my only experience being using a computer that belonged to somebody else before, meaning that everything was already configured/downloaded and I had no problem doing my job on ...
- 113
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votes
1
answer
74
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Is it possible to build and use libpam in building rstudio server without a root?
I need to build an RStudio server for my account on HPC. RStudio is not provided by the system, and I have no root privileges (and there is no support for docker/singularity).
One of the ...
- 5,513
1
vote
0
answers
533
views
How to increase memory limit and number of cores that Rstudio uses on a cluster
I launched Rstudio using FastX on Rivanna cluster (CentOS Linux release 7.3.1611 (Core)):
https://arcs.virginia.edu/rivanna
The main goal for doing that was to significantly increase the speed of ...
- 121
2
votes
3
answers
510
views
PAM Kerberos and RStudio
I am trying to get Kerberos PAM to pull a ticket and not destroy it after an RStudio login on CentOS 7.
My rstudio file in /etc/pam.d/ looks like:
#%PAM-1.0
auth required pam_krb5....
- 145
-1
votes
2
answers
12k
views
Install R on Linux Mint 18.2 Sonya Mate
I tried to install R on Mint without success. Here are instructions, that I already tried to follow on YouTube:
sudo apt-get install r-base
[sudo] password for xwing:
Reading package lists... Done
...
- 11
1
vote
1
answer
79
views
Why RStudio source pdf output difference with R prompt?
I get correct output of the following code for Rscript code.r but damaged file when running RStudio source in the minimal project, which I do not understand.
Code
pdf("test.pdf")
plot(iris)
There ...
- 6,818
6
votes
3
answers
5k
views
Debian 9 and RStudio
I just switched to Debian following the recent release of version 9. I do a lot of work with RStudio and thus tried to install the stable and testing versions which both failed due to the missing ...
- 165
3
votes
0
answers
182
views
Using ack to effectively search and RStudio project directory
I'm interested in running ack search on a RStudio project directory that mostly contains *.R script files but also some project files and often *.git files.
Directory
The project folder structure ...
- 313