I am new to shell scripting so apologies if this was asked before.
I have a file coordinates.txt like this:
765442 866447 755343 097754
I would like to pass each value of each line of the file to a variable and use those values one by one as input in a command line and save that number in part of the file name. I wrote the following code but not sure if this is the correct way to go...
cat coordinates.txt | while read LINE; do var="$(echo $LINE)" /home/users/scripts/TreeView/TreeView.sh -o $NAME_ALL.chr1.new_estimate.trees.$var --bp_of_interest $var done
so in the output -o each value one at the time is appended to the file name and each value is also used as --bp_of_interest, one at the time
Any suggestion highly appreciated. Thanks