I am a biology person and running a program named autodock. I have some files from ZINC library in .mol2 format. As per requirement I need to split this files with the
csplit command and I received all the content in my directory. The parent file was split into very very many small files. Every file name is like this:
ZINC14382748.mol2. Now I have to change all these files to pdbqt format and I have to use the following script:
#!/bin/csh # # $Id: ex02.csh,v 1.5 2007/07/19 21:52:59 rhuey Exp $ # # use the 'prepare_ligands.py' python script to create pdbq files cd $VSTROOT/VirtualScreening/Ligands foreach f (`ls *`) echo $f pythonsh ../../prepare_ligand4.py -l $f -d ../etc/ligand_dict.py end
When I use it, it says
/bin/ls: Argument list too long
In short upon successful completion it will duplicate the above number of files into another format. So is there any reasonable solution to tackle this problem?