I have the following bash script trying to run it in Linux but I receive an error message that
line 31: Rscript: command not found. Can you please give me an advice if where I am wrong?
#!/bin/bash #PBS -S /bin/bash #PBS -N garunsmodel #PBS -l mem=10g #PBS -l walltime=02:00:00 #PBS -A improvingherds #PBS -m ae nodeDir=`mktemp -d /tmp/phuong.XXXXX` cp -r /group/dairy/phuongho/garuns $nodeDir cd $nodeDir cd garuns module load gcc vle // this is to load vle platform rm -rf out mkdir out #In garuns.vpz. The output file path has to be changed. #to an absolute path that's available on the node the script is running. XXX=`pwd` sed -i "s|/group/dairy/phuongho/garuns/out|$XXX/out/|" exp/garuns.vpz Rscript R/repetability.R DATE=`date +%Y%m%d-%H%M%S` mkdir "/group/dairy/phuongho/job.$DATE" cp -r out "/group/dairy/phuongho/job.$DATE"
When I tried to access manually to
tmp/phuong.XXXXX/garuns then run R, it worked just fine.