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Is there any difference between these two methods for application to start on boot? I need an application to start before a logon occurs and am questioning whether or not Ubuntu's Startup Application menu will accomplish this for me. Otherwise, I can put a startup script in the init.d but then have to find some way of remebering thats where I stuck it (not be confused with /etc/rc.local which does not seem to work in Ubuntu 11.04) I have no other way of verifying that in fact the program is running without logging in at this time. Thanks.

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Yes, there's a big difference between those. What you can setup in the "Startup Applications" menu are all applications run after the user logs on into his/her desktop environment. And scripts under /etc/init.d are system startup scripts - they affect (almost) everything that is loaded from the moment your system finishes the kernel stage of booting (when init program is executed with PID=1).

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