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I know that you can use nice to re assign priorities of processes but which tool can be used to configure the CPU priority of a process ?

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Try the control groups (cgroups) facility. Introduced since Linux 2.6.24, it is a very flexible tool to assign CPU shares to processes as well as to place caps on resource (blockio, network, memory) utilization for each process. Here's documentation.

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Use the command "renice" to change a process priority

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