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In our working group we used Recoll on a Ubuntu PC to index all the PDF. For a while we moved everything to a Redhat server. Is there a Recoll alternative which doesn't requires a GUI adn support searching through a web interface?

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You can use Recoll from the command line if you want so.

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Recoll has a web interface, where you index on the server and search using a web browser:

https://github.com/koniu/recoll-webui

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