sed is a command-line stream editor for filtering and transforming text.

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3
votes
4answers
166 views

pattern match and capturing in unix

I have a file like this: A1-1915435_1_MIMAT0000069_MirBase_miR-16_microRNA_1_22-A1-1915435_1_ENSG00000206737_ENST00000384010_U1_snRNA_73_115 ...
3
votes
3answers
142 views

Extract lines between and including 2 patterns

I have a file with data structured as follows 1, p1, p2, p3, p4, p5, p6, p7 2, p9, p10,, 2, q1, q2, q3, q4, q5, q6, q7 2, q9, q10,, 2, r1, r2, r3, r4, r5, r6, r7 2, r9, r10,, 1, s1, s2, s3, s4, s5, ...
2
votes
2answers
98 views

How to avoid that an insertion pattern using sed is applied to the middle of a string?

Aim The aim is to convert the following string: hello_hello,123-world567-helloworld123456,world1234-hello09876 using sed into a specific format. Attempts sed -e ...
1
vote
2answers
89 views

Remove a line if regex exists only in 1st column of each line in a csv file

I have the following comma-delimited data (spaces used for visual clarity): 1 2014 23 2352 19.24 7.18 1 2014 23 2353 19.78 4.65 24 2014 23 2354 20.26 25.34 1 2014 23 2355 26.65 42.76 1 2014 23 ...
4
votes
5answers
214 views

how to split file and lines

I have a text file like : 1_01 { ; quite good spirals reset=2000 type=mandel passes=1 corners=-0.6014129278/-0.5990935452/0.427747516/0.429487053 params=0/0 float=y ...
3
votes
4answers
147 views

How to swap entire html blocks in multiple files with sed

I have tons of html pages with a simlar content as follows: <div class="wrapper"> <div class="aaa"> ...lot of html1 here like div's/spans etc.. </div> <!-- end aaa --> ...
5
votes
5answers
343 views

How to run a command only if sed replace strings

I want to enable multiverse repository in Ubuntu by a command line. sed -i "/^# deb.*multiverse/ s/^# //" /etc/apt/sources.list && apt-get update This command will run apt-get update every ...
5
votes
4answers
383 views

Remove next-to-last extension in a file name

Suppose a folder with many files with bad extensions,for example Song1.avi.mp3 Song2.avi.mp3 Song32.web.mp3 Song23.mp4.mp3 Song2a.mp9.mp3 I want to remove only the second field (web, avi, mp4). I ...
4
votes
2answers
314 views

Replace or append a line with string within a file

I am looking for advice on how to search a part of a string within a file and replace the complete line OR append that string to that file if not found. I "played" with sed for a while now, but ...
0
votes
2answers
724 views

how to rename multiple files by replacing string in file name? this string contains a “#”

How to replace a text string in multiple files in Linux How to rename multiple files by replacing word in file name? Replace string in files with certain file extension Searching a number of files ...
4
votes
3answers
129 views

Using sed to search for a string and print everything before and after within a range

I have this file: sometext1{ string1 } sometext2{ string2 string3 } sometext3{ string4 string5 string6 } I want to search this file for a specific string and print everything before this string ...
5
votes
4answers
157 views

Increment numeric pattern in file

I have a File that contains only the following line: BOF (REF-REQ0001 SW_requirement) EOF I need to generate a second file that would contain the following: BOF (REF-REQ0001 SW_requirement) ...
4
votes
4answers
115 views

Remove a character between 2 known strings

I have a data set like below: \"XXX \ START sapiodj \\" aj \d 2387 END hddo\" START bbcc \\" END ss My Requirement: I want to remove all occurrences of backslash\ and double quotes " between ...
1
vote
0answers
20 views

Take the unknown contents of variable as literal in sed [duplicate]

I have two files: a.patterns contains patterns in a one per line way "`" "^" "<" "<(" "<)" "<[" "=" ">" "_;|^+*+?@" and b.data contains comma separated values. 1,1,0,"*",1 ...
3
votes
4answers
150 views

tab separation of the file

I have a file with seq likes this ATCGTTTCTCAGCCTTTTGGCAAGACCAAGTGTAGTATCTGTTCTTATCAGATATTGGTATCTGCAGGCACTCCTGGAACCAAT ...
5
votes
3answers
197 views

Replace uppercase to lowercase except first letter of each word in specific line

I want to replace names that I received in uppercase letters only. The names are mixed with other information which should stay as it is. AUTH: at the beginning of the line identifies it as a line ...
6
votes
3answers
223 views

sed with multiple expression for in-place arguement

I am trying to replace multiple words in file by using sed -i #expression1 #expression2 file Something 123 item1 Something 456 item2 Something 768 item3 Something 353 item4 Output (Desired) ...
0
votes
2answers
105 views

Extract multiple instances of text between two strings [closed]

I'd like to extract text between two strings in a text file that contains Spotify chart results Text file extract: ...
0
votes
1answer
69 views

Need to swap the -(minus) sign for only numbers and not text for a given row

I have a input in which delimeter is <;| like given below:- 1-<;|3-Text <;|3.13-<;|0.28-<;|9 0.12-<;|2-Text <;|3.99-<;|4.11-<;|6 0.13-<;|3-Text ...
3
votes
1answer
77 views

sed repeating the last line in the stream

I have code in a script similar to this... smbconffile="/etc/samba/smb.conf" sed -i 's/.*[\[CMI\]]/\[CMI\$\]/' $smbconffile && echo "Success" || "Failed" sed -i 's/.*[\[LOCAL\]]/\[LOCAL\$\]/' ...
0
votes
1answer
53 views

replacing some text in square brakets in bash

I have this string that I get from running jack_lsp. a2j:Arturia BeatStep [28] (capture): Arturia BeatStep MIDI 1 in a xml file, I save the connections state from a previous jack session. ...
0
votes
1answer
30 views

How to create a file name for the pipeline to delete all files?

So I want to delete all files in my current directory using the following pipeline: ls | sed -rn 's/(.*)\.jpg$/mv -n & \1.jpeg/pi' | sh How to create a file, named so that running the above ...
3
votes
3answers
796 views

Replace %20 with a space in filenames? [duplicate]

I have a list of files that are using %20 to indicate a space in their names. I'm currently trying to do the following to change them all from %20 to a space " ". for x in *.txt do mv $x $(echo $x ...
2
votes
1answer
41 views

comparing 2 lists with additional data to be printed

I have a file lets say file1.txt ENSG00000223116 AL157931.1 ENSG00000233440 HMGA1P6 ENSG00000207157 RNY3P4 ENSG00000229483 LINC00362 ENSG00000252952 RNU6-58P I have another file say ...
1
vote
2answers
38 views

Parse command output [duplicate]

I want to only get the value associated to "cached" column of the free -m command. What is the most efficient way to achieve it? Something with sed or awk?
1
vote
2answers
27 views

Erasing in stdin all instances of regexes defined in a file

I am after something like a combination of sed 's/pattern//g' and grep -f patternfile.txt. Basically I would like the input stream to be stripped of all instances of the regex patterns defined in ...
1
vote
3answers
210 views

Replace a string and replace it with a part of itself

I am cleaning up my data that is stored in text files. Each line starts with a category label followed by the actual data that I want to clean up. There are many text files in different subfolders, so ...
0
votes
1answer
57 views

Removing contents from a file

I have a file like this >gene1*ENSG24 CTTGGGGGGCTGGGGGCCAGGTGAAAGGGAAATGGAGGGCAGCACCCGCG AGCCCTCATTGCCTATAGTGGTTTCCATGGCGATCATGTAAGAGTCAATG TCGTCATTGGCAAAGTCGTCCGGGTGGGGTGTGCTGTAGGCAGAATCGGA ...
4
votes
3answers
401 views

Insert text from file inline after matching pattern in another file

I'm trying to take the contents of a file and insert it after a matching pattern in another file using sed. My question is very similar to this question, but I wish to insert the contents of a file ...
3
votes
2answers
71 views

How do I efficiently select specific line numbers from a list of records?

I want to take a list of numbers representing line numbers of a source file I want to filter and filter those lines from the source file. How I can build a unix pipeline to extract these lines from ...
4
votes
1answer
74 views

Insert missing data within blocks

I`m a biologist and I am trying to solve this problem, please guide me on where to start. I do not know which forum to post this in, please let me know if this place is not appropriate. I have blocks ...
2
votes
2answers
293 views

Remove escape characters using sed

I have input coming from pipe which contains special escape characters. For illustration, the stream looks like this: printf "foo.bar\033[00m" > file cat file How can I remove the trailing ...
0
votes
2answers
70 views

How to get portion of lines from all .txt files in a directory?

I have 5,000 text files of journal article citations. I am trying to extract only the abstract portion. Meaning that I want to keep the same text document and delete all the other text except for ...
5
votes
3answers
399 views

“parentheses not balanced” even though I escaped it?

Im trying to run this simple sed command sed '/VALUES\ \([0-9]/d!' It still gives me an error saying "RE error: parentheses not balanced" (yes the quotes are there). What can I do? I mean I could ...
1
vote
1answer
84 views

substitute complex text string in several files that contains special characters

I need to replace a complex string in several files in a directory. The string that needs replaced is: ...
1
vote
1answer
35 views

how to move a header to the last column, using awk or sed

how to move a header to the last column, using awk or sed input file look like this: Line 1.000N x y z 23.88 44.66 56.6 23.81 41.66 53.6 Line 81.000N x y z 13.88 34.66 56.6 13.81 ...
0
votes
3answers
81 views

Strip the file base name, keep the directory part

I have a string which looks something like this dir/subdir/othersubdir/file.txt But it can also look like dir/file.txt or dir/subdir/file.txt Now, I am making a script where $P is the full ...
2
votes
1answer
59 views

sed: append line and number output

In Linux, say one wants to add the following line before line number five (thus line nuber 5 becomes line number 6) and wants to have all the lines in the output numbered throught the sed 'tool' = ...
8
votes
5answers
2k views

Convert file contents to lower case

I have temp file with some lower-case and upper-case contents. Input Contents of my temp file: hi Jigar GANDHI jiga I want to convert all upper to lower. Command I tried the following command: ...
1
vote
3answers
64 views

Splitting a string up to a specific location

I have a question and wondering how to address it with sed? How does one cut a variable up to a specific location, in my case _g? Example variable="This_is_good_g0r0s0_continues" I need to cut ...
2
votes
2answers
51 views

Combine output from df -h /dev/xvda1 into a single line

I want to convert the 2 line output from df -h into a single, meaningful line i.e. Take [root@ip-10-42-1-246 tmp]# df -h /dev/xvda1 Filesystem Size Used Avail Use% Mounted on /dev/xvda1 ...
3
votes
2answers
168 views

Sed: modify every non-first word repetition for every word in text

Can you help me to do something like that using sed? qq ab xyz ab qq aa ab Becomes: qq ab xyz +ab+ +qq+ aa +ab+
0
votes
2answers
88 views

problem with grep -f list of pattern

After searching, reading and trying possible solutions for much about grep lines with the list of patterns, hence I am writing. It is I know a very basic and have been attended in many forums. But I ...
4
votes
5answers
205 views

Use sed to print from the very first line until the line containing the last occurrence of a pattern?

I know the following commands will print up to the first occurrence of a certain pattern but will not include the later occurrences: sed -n '1,/<pattern>/p' <file> sed ...
2
votes
1answer
222 views

Replace certain text occurred within curly brackets

I have sample file as follow : WEA { Direction = Input Tag = WriteEnable PortId = "A" } MEA { Direction = Input Tag = MemoryEnable PortId = "A" } CLKA { ...
2
votes
2answers
138 views

How to replace this value in bash/sed

I need help: In my file contains the following text http://mydomain.com/test.phtml http://mydomain.com/classes/main.class.phtml http://mydomain.com/scripts/filemanager/nl.phtml i need this (i ...
0
votes
2answers
388 views

Remove a carriage return with sed

I have a large CSV file. One of the fields contains an error. This error appears as a new line in the file. Since now i've been using notepad++ with this command to correct the problem : \r";" ...
0
votes
2answers
50 views

Substituting \ for \\ in column

I exported a column of thousands of salts from Mysql for hashcat. Every instance of the character \ was replaced with a double character \\ in the exported column. Is there a way to either sed or awk ...
1
vote
1answer
51 views

How do I add something to the end of “}” if a pattern is matched?

If I have something that looks like this: hello {sdsdsdsds} pattern {askjdasjkdjasd} hello {siadsd} pattern {iuewer} So if pattern if matched before {*}, I need to add a ;. Output: hello ...
4
votes
3answers
357 views

How to change a set of characters between delimiters for exact line?

I am trying to write a script for changing user password in dovecot user database and I can't understand how to replace a set of characters between delimiters for exact lines with sed. Please check ...