1
vote
3answers
70 views

Pattern Matching and Delete the whole line

I want to delete all the Lines of File 1, if Column1 of File1 matches exactly with Column 1 File2. File 1: r001:21:10 21 AAAAAATTTGC * = XM:21 r002:21:10 21 YAAAATTTGC * ...
1
vote
5answers
67 views

Replicate a column in a one-line CSV file

I have a file that consists of a single line: a,x,b,c,d,e I want to convert this into a,x,b,x,c,x,d,x,e,x Which is the easiest way to achieve this? A solution based on Python will be most ...
2
votes
1answer
30 views

Count and merge consecutive patterns

I'm searching for a short snippet to find, count and merge consecutive duplicates using standard tools or a common scripting language. Say our input is: 1 2 2 2 7 22 a b b c c c c c d dd 2 2 c c ...
4
votes
6answers
314 views

What is the easiest way to check if column A and B values goes both ways with AWK? [closed]

What is the easiest way to check if column A and B values goes both ways? Output to check: Mike John John Mike Pamela Barbara Barbara Pamela Mike Paul Roger Paul Desired output Mike <-> ...
7
votes
3answers
1k views

How do I make python programs behave like proper unix tools?

I have a few Python scripts laying around, and I'm working on rewriting them. I have the same problem with all of them. It's not obvious to me how to write the programs so that they behave like ...
4
votes
2answers
3k views

What is the python equivalent of grep -v?

I like grep -v. I use it all the time. But I am also doing some text processing in python, and there is one crucial thing that I lack. Usually, I use grep -v to take extraneous stuff out of text. ...
2
votes
2answers
1k views

How to execute this particular shell command from Python?

OK, so, I have this non-functional shell script, which I am rewriting piece by piece in python, except I am getting an "unexpected "|" error" from the shell (see below): #/bin/sh LINES=`cat $@ | wc ...