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2
votes
2answers
97 views

Extract a column from whitespace-separated fields that are not aligned

How can we extract a column from output in which whitespace is not in a regular format? For example, when we type ps -ef, it shows all the process, process id's.... etc. How can we get only the last ...
0
votes
2answers
570 views

Align columns in ASCII file

I have a text file that looks like his: #c1 c2 c3 c4 c5 c6 c7 c8 c9 c10 c11 c12 c13 4599 995,274 2523,658 ...
1
vote
1answer
574 views

Sorting by one column then the

Say i have a output file with following: 010513 08:04 ROUTER1 192.168.1.1 68.130.5.10 HIT(1) 010513 08:04 ROUTER1 172.168.1.1 28.130.5.10 HIT(1) 010513 08:04 ROUTER1 122.168.1.1 ...
2
votes
2answers
927 views

Data pivot with awk

I'm trying to pivot a file using awk. This is an example of my input File: VarName;TimeString;VarValue;Validity;Time_ms A;23.11.201215:03:53;1;1;41236627696,7593 ...
2
votes
3answers
2k views

print output to 3 separate columns

MYPATH=/var/www/html/error_logs/ TOTALFILE=$(ls $MYPATH* | wc -l) FILETIME=$(stat --format=%y $MYPATH* | head -5 | cut -d'.' -f1) FILE=$(ls -1tcr $MYPATH* | head -5 | rev | cut -d/ -f1 | rev) ...
2
votes
3answers
514 views

Merging content of two files with comparing content of column

I have a problem trying to merge content of two files : file 1 : 873 1.1.1.1 1033 99.99.99.10 1108 78.2.204.174 1257 78.2.8.181 file 2: test1 78.2.8.181 p6 test2 99.99.99.10 p9 test7 1.1.1.1 ...
6
votes
2answers
457 views

How can I use column to delimit on tabs and not spaces?

I'd like to use Unix column to format some text. I have fields delimited by tabs, but within each field there are also spaces. column delimits on white space (tabs and spaces). How can I make column ...
2
votes
2answers
113 views

add fields from different files

I have two files A and B with the same number of lines. Each of them has multiple columns. I want to add field 6 in file A with field 3 in file B for each line. e.g.: file A: 2769 RUT10EKl3fY 0 ...
2
votes
1answer
598 views

intersection of two files according to the first column

I have two files in file A, there are sequence_numbers in the other file B, there are many columns, and the first column is sequnce numbers, I want to get a files with all the lines in the B with the ...
1
vote
1answer
192 views

Combining files with 4 columns each, into 4 files for each column [closed]

So I have a bunch of text files which look like this: T1 r1 a b c d r2 d e f g ... T2 r1 h i j k r2 l m n o ... And I want to make FOUR different text files in the following ...
1
vote
3answers
152 views

How to sort and join at the same time?

I have 2 files, one having 2 columns, another having 1 column. The second file is sorted using sort -u. Now the task is I need to join this column with the first column of the first file, which is not ...
2
votes
2answers
532 views

How do you truncate all columns in a file to a specific length?

Given columned text in a file that is delimited by a certain character, how do you truncate the width of either a specific column(s) or all columns? The use case is that I am reading some log files ...
7
votes
2answers
3k views

Is there a simple command for outputting tab-delimited columns in bash?

E.g. I have a file (produced with echo -e "var1\tvar2\t\var3\tvar4" > foo) that are output (in bash): $ cat foo case elems meshing nlsys uniform 2350 0.076662 2.78 non-conformal ...
7
votes
7answers
318 views

Swapping an unlimited number of columns

I have a file with columns. See below for an example: a b c ... z 1 2 3 ... 26 I'd like to swap all columns where the 1st becomes the last, the second becomes the one before last...etc.. z y x ...
4
votes
2answers
124 views

Column mismatch and substituting

input.txt (tab-delimted) TTTTOTTT00000000008 RTTTT899 5.00E-28 TTTTOTTT00000000046 RTTTWRR 3.00E-31 TTTTOTTT00000000051 2.00E-11 TTTTOTTT00000000051 7.00E-12 TTTTOTTT00000000054 ...
4
votes
4answers
3k views

Compare two files: lines present in one, not in the other, by one column comparison

I need to compare 2 files. Column 1 is the same in both files. Column 2 is what I want to compare: I want all lines in file 1 that are not in file 2 when comparing column 2. Column 3 is different in ...
2
votes
1answer
214 views

text processing-perl

I am a biologist. I would like help of computer experts to help in text file editing. Here is what the input file looks like: ##dsfsd2 ##sdf-sdf sasg 5.6.3 gi34_ex Gen CDS 161 317 . ...
5
votes
3answers
2k views

How can sed output be formatted like printf's formatted printing?

Can sed replace text with a string formatted like printf's formatted printing? The following sed command replaces a line starting with the current value of "$domain" with several values specified in ...
3
votes
4answers
2k views

How to reorder a large number of columns?

I'm looking for a pipeable one-liner to reorder a large number of columns (where manually entering the column numbers in e.g. an awk command such as awk '{print $3,$2,$1}' is not feasible). The order ...
3
votes
5answers
1k views

Add character to beginning and end of column

I have a file like this: 78@54@this@15@23 65@22@is@92@16 34@12@an@14@18 13@42@example@52@22 And I want to change it to this: "78"@54@"this"@15@23 "65"@22@"is"@92@16 "34"@12@"an"@14@18 ...
4
votes
1answer
604 views

Linux sort second last column

I would like know how to sort the second last column ? It has the word "days=" in front of the number. I'm able to get the column with awk '{print $(NF-1)}', but sorting is wrong. 457000 ...
5
votes
3answers
4k views

Search for values in 2 columns from CSV

I have a csv files with say 20 odd columns. I need to get the 14th and 15th column values where value in 14th column is say "VALUE1" and value in 15th column is "VALUE2". My condition gets satisfied ...