0
votes
1answer
441 views

Script for running sequential job

I started recently to learn using Linux. I want to write a script in bash shell to run a serial job on a cluster. I have been searching for hints and instructions on how to write such a script. I ...
2
votes
2answers
539 views

comm fails on bash variable input

I have a script that's supposed to get the list of files of two directories, get differences and execute some code for certain files. These are the commands to get the file lists: list_in=$(find ...
5
votes
1answer
490 views

Running parallel bash jobs on a HPC cluster using GNU parallel

On an HPC cluster I am trying to run multiple bash scripts (permute2.sh) from 1 bash script using GNU parallel, however it doesn't complete every job. It randomly completes one job, while it is stuck ...