awk - pattern-directed scanning and processing language

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4
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4answers
597 views

How to remove character and space from a string

Hello I have one file with output Name : ABC Name : CDE Name : ZYS I want to get the result ABC CDE ZYS How can i get it through SED command. I have tried. sed s/'Name' but ...
1
vote
1answer
80 views

Using awk for data manipulation

I have an input file in the following format. #track chr11 61731756 61735132 FTH1 - chr12 6643584 6647537 GAPDH + chr11 18415935 18429765 LDHA + chr12 21788274 21810728 ...
10
votes
9answers
1k views

How can I print the longest number in a string?

I am looking for a method to print the longest number in a string. E.g.: If I have the string 212334123434test233 how can I print 212334123434 ? Note: I am looking for the longest continuous ...
1
vote
1answer
115 views

Parse/Manipulate in awk

I am new to awk programming. I have a question on manipulating text file, which is required to draw certain network based images in a visualization software (Circos http://circos.ca) I have input ...
2
votes
1answer
74 views

Pipe hex characters to awk

This command works as expected $ awk 'BEGIN {print "\x41"}' A As does this $ printf '\x41' | awk '{print}' A However when you rely on awk to recognize the hex characters, it fails $ echo '\x41' ...
6
votes
5answers
990 views

Find images by size: find / file / awk

I've been trying to find png image files a certain height (over 500px). I know that file will return image dimensions. Example: $ file TestImg1a.png TestImg1a.png: PNG image data, 764 x 200, ...
1
vote
2answers
70 views

Parse,Manipulate Data In linux/Unix

I want to have exactly the same output in this post(http://unix.stackexchange.com/questions/126139/extract-data-in-linux-unix)as above,but I have a new input file,which is below: ABCB11 4 ACE 11 ...
1
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2answers
164 views

Extract data in linux/unix

I have input data which I want to parse and extract values using awk/grep/sed: group-2 9 10 text color=black,from=ABCB11,fromid=4,order=2,thickness=3,to=ACE,toid=11,use=1,z=1 group-3 0 1 text ...
7
votes
5answers
360 views

SED : Case Match Pattern Replacement

I have a source code spread across several files. It has a pattern abcdef which I need to replace with pqrstuvxyz. The pattern could be Abcdef (Sentence Case) then it needs to be replaced with ...
2
votes
1answer
222 views

Regex doesn't work with grep

I have a string like this TEST="/dev/sda1 on /media/sda1 type vfat (rw,relatime,fmask=0000,dmask=0000,allow_utime=0022,codepage=cp437,iocharset=iso8859-1,quiet)" (Result from mount | grep sda1) ...
1
vote
2answers
104 views

How to multiply two columns in awk?

I want to multiply column 1 with column 2 (till end of file) in input file and should output 1 column and multiplied 3 column in separate file. input.txt 1 677679866 2 121867616 3 49413198 4 ...
0
votes
1answer
44 views

How can I print a specific occurence of a range pattern?

I am trying to extract several data fields out of somewhat peculiarly formatted strings. Each string has a format similar to the following (spaces added for emphasis): 1 abcd 2 1 efg 2 hij 3 ...
0
votes
2answers
123 views

Compare first column in different files

I want to compare one file with other files in the same directory. file1.txt contains: move 34#123# get 11#278 put 33#29#567#23 file1.txt should compare with files 1.txt and 2.txt. 1.txt ...
3
votes
2answers
343 views

How can I print out all but the last n characters in bash?

I'm working with standard input (cating two files together) and want all but the last 10 characters of the result to be passed through the next command. All I can find through searching is using sed, ...
6
votes
3answers
1k views

How to subtract rows (lines) with AWK

I'm trying to figure out how I can use AWK to subtract lines. For example, imagine the input file is: 30 20 The output would be: 10 Now, as a test I am trying to calculate the "Used" memory ...
3
votes
2answers
83 views

Printing in awk up to specific line and 5 more results

I'm trying to print out all the lines up to the appearance of a particular song and 5 more songs with that. The problem i'm new to the shell what I have to fix in the bellow commands? RANK NAME ...
2
votes
1answer
44 views

I'm trying to count and print song file names using awk as following

RANK NAME BAND YEAR GENERE DOMESTIC/INTERNATIONAL 206:Reach Out, I'll Be There:The Four Tops:1978:Pop:3/2 207:Bye Bye Love:The Everly Brothers:1950:Classic:3/2 ...
3
votes
4answers
144 views

Identifying genes from a list of genes

I have a gene list file. Some thing like this SWT21 SSA1 NRP1 EFB1 TFC3 MDM10 I have another file which also contains the names of these genes in my list along with other ...
3
votes
3answers
175 views

Rearrange text file by prepending data rows with header row

I have a file whose content looks like this: 2009 150 0 0 0 0000 75.316 0.0400390625 0.00007 0.00000 0.8980 76.216 0.0400390625 0.00007 1.00000 0.9046 77.217 0.0400390625 ...
0
votes
2answers
76 views

Co Record Verification

I have a task requiring some awk to verify a few records quickly. Let' say: A1,A2 B1,B2 C1,C2 C2,C1 A1,C1 A1,B1 B1,A1 Which would be the best way to check for reciprocity only between the A# the ...
3
votes
3answers
98 views

Append columns in a text file to after the final row

A smaller version of many data files I have looks like this: 0 0 0 0.05 9.6877884e-06 0.0024898597 0.1 4.2838688e-05 0.0049595502 0.15 0.00016929444 0.0074092494 0.2 0.00036426881 0.009839138 0.25 ...
4
votes
3answers
3k views

Filter a .CSV file based on the 5th column values of a file and print those records into a new file

I have a .CSV file with the below format: "column 1","column 2","column 3","column 4","column 5","column 6","column 7","column 8","column 9","column 10 "12310","42324564756","a simple string with a , ...
1
vote
1answer
124 views

Searching for all the array elements in another array?

This is how I would search for an element in an array. count=${#ARRAY[@]} lsearch() { status=-1 for((i=0;i<count;i++)) do Temp=$1 if [[ $Temp -eq ${ARRAY[i]} ]] then ...
3
votes
2answers
612 views

Using grep/sed/awk to classify log file entries

I need to process a very large log file with many lines in different formats. My goal is to extract unique line entries who have the same starting pattern, e.g. '^2011-02-21.*MyKeyword.*Error', ...
19
votes
11answers
3k views

Remove duplicate $PATH entries with awk command

I am trying to write a bash shell function that will allow me to remove duplicate copies of directories from my path environment. I was told that it is possible to achieve this with a one line ...
1
vote
3answers
61 views

awk want to total by hour and variable

I am able to run this and it works fine - note: field $1 is a time/date stamped field.. gawk -F ":" "{ print $1 }" /cygdrive/c/counting/ourlog | sort | uniq -c | sort -r 57339 2014-03-21 09 54290 ...
3
votes
4answers
222 views

merge 2 rows based on the same column values

I have a file like below. 47196436 47723284 name1 1.77273 42672249 52856963 name2 1.06061 52856963 430695 name2 1.16667 55094959 380983 name3 1.55613 17926380 55584836 name4 1.02461 3213456 34211 ...
2
votes
3answers
99 views

awk - to add a column after matching the remaining columns

I have a file (file1.txt) with the contents as below. 8145216 3377090 1.5 1405541 53595498 1.53637 I need to generate all the possible combinations for the first 2 columns in the above file. I use ...
2
votes
2answers
102 views

Merging multiple lines based on column 1

I have a file like below.. abc, 12345 def, text and nos ghi, something else jkl, words and numbers abc, 56345 def, text and nos ghi, something else jkl, words and numbers abc, 15475 def, ...
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3answers
65 views

Print the number of values which have the special characters in them

I have a text file like the one below. I want to check the second column and print the count of values which have some special characters in them. 101,aaa,d01 102,*&%,d02 103,$%&,d03 ...
-1
votes
1answer
58 views

How to assign variable in awk

I have a code like below: $ awk -F'[]]|[[]' \ '$0 ~ /^\[/ && $2 >= "2014-04-07 23:00" { p=1 } $0 ~ /^\[/ && $2 >= "2014-04-08 02:00:01" { p=0 } ...
0
votes
2answers
80 views

Extracting with grep/sed a first pattern and then a second pattern that occured some lines before and related to the first

I'm trying to extract a specific line from a .htm file when a pattern occur ("Event 100" in my example below) but at the same time I need to retrieve also another pattern which is related to the first ...
1
vote
1answer
38 views

linux if else fails for some IP's

i am using the following code with if then to mount. It works for some IP's, it does not work for some IP's especially for FAILURE statement. Here is the code is_mounted() { mount | grep -qohw ...
2
votes
2answers
170 views

How to do alphanumeric validation for a particular column (say $2) of a file using awk?

How do I perform alphanumeric validation for a particular column (say $2) of a file using awk? For example I've tried: awk -F, '{if ($10==(/[0-9a-zA-Z]/)) count+=1;} END {print count}' final.csv I ...
4
votes
7answers
516 views

How to split a filename list in 5GB sets?

I have a pretty big list of files which I like to group in smaller list of 5GB each for further processing. The file list is in the following form: "size" (from du) "tab" "absolute path", like this ...
1
vote
1answer
66 views

AWK - every thing in one line? [closed]

Hello can I make several changes in a file using just on line with awk? For example, transform this: awk < towhee_input5 -v k="$nstep" 'NR==18 {$0=k}{print}'> towhee_input6 awk < ...
2
votes
3answers
257 views

Merge 2 files based on all values of the first column of the first file

I need to merge below 2 files: file1: TABLES REF-IO HEAD-IO DIFF-IO test 200 500 -300 exam 2 3 -1 final 2 1 1 mail 4 2 2 TOTAL 208 506 -298 ...
1
vote
2answers
232 views

How to replace a custom date string in a text file

I've looked through several tutorials and a couple of StackOverflow posts, but I've not seen any examples using sed or awk which use dates. I have a text file that contains this as the first line, I ...
3
votes
4answers
251 views

extract the characters before () using grep

I need to extract the characters before the character '('. My file structure is: rose(good)ook daisy()no lilly(bad)fine sunflower()nice I need output file as in the form of: rose ...
5
votes
4answers
475 views

Reduce the over use of files in text processing

Currently, I have a file (Results.txt) which has 27k rows. The file content is as below. 45008657 | A. | | Long | 0 49210987 | A. | ...
1
vote
2answers
107 views

Union of two files and unique in new file

I have two files with few similar column one, two and third column with small variation and few other columns as follows. file 1: AT1 AT22 24 1 ATAGATA ATTATAT AT2 AT24 22 0 ATAGATA ATTATAT ...
1
vote
1answer
65 views

Remove the string before the whitespace

I want to remove a word before the whitespace. My file structure is: ant tiger static rabbit lion dynamic monkey donkey I need the output as: ant tiger rabbit lion monkey donkey ...
3
votes
2answers
72 views

introduce line break at the same position based on another file

I have 3 input files all having the same number of lines. I have come up with a movie example to make the question look interesting. file1.txt -- Essentially contains the actor names. ...
22
votes
8answers
30k views

Is there a way to get the min, max, median, and average of a list of numbers in a single command?

I have a list of numbers in a file, one per line. How can I get the minimum, maximum, median and average values? I want to use the results in a bash script. Although my immediate situation is for ...
3
votes
1answer
34 views

update line based on previous line

I have a issue since I'm not familiar with awk. I have csv file generated from sar -d output converted to csv style: 12:33:41 unix,restarts 12:35:00,lofi4096,0,0.0,0,0,0.0,0.0 ...
3
votes
3answers
3k views

How to parse JSON with shell scripting in Linux?

I have a JSON output from which I need to extract a few parameters in Linux. This is the JSON output: { "OwnerId": "121456789127", "ReservationId": "r-48465168", "Groups": ...
1
vote
3answers
294 views

Extract part of string using grep

I have 3 files in a directory MYO144064T MYO144064TA MYO144064TX Where the digits and 11th character will change. In my csh script, I want to extract the letters 'A' and 'X' probably using grep ...
3
votes
4answers
199 views

Split the input file with line breaks

I am trying to insert line breaks on a file based on the same names which happens to be the second field in my file. So, my input file is like below. 17412193|name1|organization ...
1
vote
5answers
262 views

Use awk to find all Ports for each IP that have https open

I'd like to print all ips (IP space Port) which have open https ports given a gnmap file. An example output for a line that has only https running on port 443: 123.123.123.123 443 A more ...
2
votes
2answers
403 views

How to find and replace a field column value in UNIX

I have file with the value say which is delimited with | 123-|aaa|bbb|123|123.0|123-|123.01-|-123.02|123.03-|aaa|bbb|123-|aaa-|-bbb|cc-cc|123.04-|aa123-|123.05- I need to pick the column values ...