awk - pattern-directed scanning and processing language

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5
votes
4answers
100 views

Increment numeric pattern in file

I have a File that contains only the following line: BOF (REF-REQ0001 SW_requirement) EOF I need to generate a second file that would contain the following: BOF (REF-REQ0001 SW_requirement) ...
3
votes
4answers
130 views

tab separation of the file

I have a file with seq likes this ATCGTTTCTCAGCCTTTTGGCAAGACCAAGTGTAGTATCTGTTCTTATCAGATATTGGTATCTGCAGGCACTCCTGGAACCAAT ...
-2
votes
4answers
40 views

How to ignore the lines starts with # using grep / awk

cat /etc/oratab #test1:/opt/oracle/app/oracle/product/11.2.0.4:N +ASM2:/grid/oracle/app/oracle/product/11.2.0.4:N # line added by Agent test2:/opt/oracle/app/oracle/product/11.2.0.4:N ...
3
votes
3answers
189 views

awk manipulation of file

I have a big file in this format, whose first few lines I am showing you including the header. gene c1 c2 c3 c4 c5 c6 c7 c8 G1*1 0 0 0 0 0 0 0 0 G2*2 0 0 0 0 1 ...
1
vote
1answer
84 views

awk array using number as value did not work

I have a reference file: Refrence File Dpse\GA30012 FBgn0000447 chr2 26607738 26607962 -1 Dpse\GA19764 FBgn0085819 chrX 28571020 28571736 -1 Dpse\ttk FBgn0000100 chr2 ...
3
votes
3answers
250 views

Calculate and divide by total with AWK

Given the following data file... foo 10 bar 20 oof 50 rab 20 ... how would I print column two as a percent of the total of column two? In other words, I want... foo 10 10% ...
-1
votes
2answers
30 views

understanding sed, awk and curl interaction extracting ssh URL information from github page

I needed to pull every public repo in a user's GitHub account. To do this I got the API output of https://api.github.com/users/SOMEUSER/repos This is what I came up with. To extract the ssh_url line ...
0
votes
2answers
34 views

Regex gone Wrong

I am using a Bash script to use awk to look for this: (0010,0080) The awk will generally look for any numeric value seperated by a comma in between parenthesis. I have done everything I can think of ...
-2
votes
1answer
44 views

Making use of awk on strings [closed]

I'm interested in listing in the terminal the lines from a csv file where the first character is 'A' . Is there a prompt way to do that?
1
vote
3answers
52 views

Calculate and round numbers up in bash

I'm struggling with a slight variation on: How to calculate by taking first field and How to round floating point numbers in shell? I have a file that looks like (space between columns): 1533 ...
0
votes
3answers
32 views

kill several processes using awk tools

I want to stop several processes using awk.My command is like this: sudo ps -ef|grep wget |grep -v grep|awk '{print $2;sudo kill -STOP $2}' I want to stop all processes which is running wget. $2 of ...
1
vote
1answer
65 views

Counting the instances of specific words in a text, using awk [duplicate]

If I have a file words_of_interest.txt with one word per line, is there a way to use awk (or some other *nix tools) to obtain the number of times each of these words occurs in another text file ...
3
votes
1answer
31 views

comparing 2 lists with additional data to be printed

I have a file lets say file1.txt ENSG00000223116 AL157931.1 ENSG00000233440 HMGA1P6 ENSG00000207157 RNY3P4 ENSG00000229483 LINC00362 ENSG00000252952 RNU6-58P I have another file say ...
1
vote
2answers
26 views

Parse command output [duplicate]

I want to only get the value associated to "cached" column of the free -m command. What is the most efficient way to achieve it? Something with sed or awk?
0
votes
2answers
42 views

Using variable with awk -v in a shell script

I am modifying/re-writing some of the scripts written by former employees of my company and in one of the shell scripts I found the following line. b=`benchmark=30;grep "Waiting for timer" wk.txt | ...
4
votes
3answers
82 views

Insert text from file inline after matching pattern in another file

I'm trying to take the contents of a file and insert it after a matching pattern in another file using sed. My question is very similar to this question, but I wish to insert the contents of a file ...
4
votes
1answer
69 views

Insert missing data within blocks

I`m a biologist and I am trying to solve this problem, please guide me on where to start. I do not know which forum to post this in, please let me know if this place is not appropriate. I have blocks ...
-1
votes
2answers
31 views

Extract 2 fields from 2 different lines

I have the below lines in my file # Employee Id : ABC123, # Employee Name: Vivek # Employee Type: Temp Join Date: 31-jan-2014 Buz Code: 2098 # Employee Comments: # ...
1
vote
7answers
104 views

repeat a line, splitting one field

I have a tab delimited file in which in every line I have this: K00001;K00004;K00008 0 0 34 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 52 0 0 0 6 0 I would ...
1
vote
1answer
25 views

how to move a header to the last column, using awk or sed

how to move a header to the last column, using awk or sed input file look like this: Line 1.000N x y z 23.88 44.66 56.6 23.81 41.66 53.6 Line 81.000N x y z 13.88 34.66 56.6 13.81 ...
1
vote
2answers
37 views

how to compare values in two columns in two different files, echoing full lines where absolute value of difference is < a small maximum value?

I want to do a line-by-line comparison of values in, say, column 6 of two files, and then echo the lines and their full contents, piping them into a combined file, say the line from one file and then ...
2
votes
1answer
77 views

Specify lines in awk?

Im going to use this awk script to delete duplicate lines from my text file: awk '!x[$0]++' However, I want to specify which lines that they are to be run on. There could be 10000 duplicates, but ...
0
votes
2answers
49 views

delete multiple users

I am the root user and I am setting up a menu for another user to use. This other user will only get this menu. There are two options that are interlinked: the first option is to search users. The ...
4
votes
2answers
161 views

grep for repeated values from pattern list

I have file A.txt which is a lists of unique ids (column 1) and its corresponding values(column 2): A.txt ABC1D_T1_B1 123.4 ABC2D_T1_B2 146.7 ABC3D_T1_B1 567.8 ABC4D_T0_B2 96.8 ABC1D_T0_B1 ...
2
votes
2answers
34 views

Create small record files from a big group of record file

I have a file like this : Mainfile: Record|1111|ABC text in between for record 1 text in between for record 1 Record|2222|XYZ text in between for record 2 Record|3333|XYZ ...
2
votes
7answers
210 views

How to print lines with blank 5th field in CSV

I have to check if the fifth field is empty in a CSV file. This is my file: 1,abc,543,87,DATA,fsg; 1,abc,543,87,,fsg; 1,abc,543,87,DATA,fsg; 1,abc,543,88,,fsg; 1,abc,543,,DATA,fsg; As you can ...
1
vote
1answer
28 views

awk how to set parameter $2 become $b?

In a Bash script: #!/usr/bin/bash #grep() #{ #grep -q #} if [[ -z $1 ]]; then echo "usage: pkill -signal process name " fi if [[ -z $2 ]]; then echo "error: not enough parameters " exit fi ...
2
votes
2answers
40 views

Combine output from df -h /dev/xvda1 into a single line

I want to convert the 2 line output from df -h into a single, meaningful line i.e. Take [root@ip-10-42-1-246 tmp]# df -h /dev/xvda1 Filesystem Size Used Avail Use% Mounted on /dev/xvda1 ...
1
vote
2answers
77 views

Remove lines based on duplicates within one column without sort

I have large 3-column files (~10,000 lines) and I would like to remove lines when the contents of the third column of that line appear in the third column of another line. The files' sizes make sort a ...
0
votes
4answers
54 views

Print last character in the given path

I am trying to concat "comnp.dat_CY*" files into one file. File name, source path and destination path are the parameters. I am trying to find the last character in the path to check if it is "/" or ...
-7
votes
3answers
60 views

How do you print the current month, day and year using awk and date?

I can't seem to grab the month, day and year using awk '{print $2, $3, $6}' date Does anyone know how to?
3
votes
1answer
26 views

create a realtime machine by assigning CPU cores to critical processes

I'm using an Udoo board for running two critical processes. It can run Ubuntu ARM edition and it has a Quadcore processor. I need to set the affinity of all the processes afinity running and the ones ...
2
votes
2answers
147 views

How to base awk selection on contents of 1 field?

How can I select all the records that have '2' as the second field? My data is: $ cat numbers.txt 1 2 3 4 5 6 7 8 2 4 6 8 10 12 14 16 3 6 9 12 15 18 21 24 My awk is: awk '$2 - /^2$/ {print}' ...
3
votes
2answers
79 views

Read a two-character column as two separate columns

I have a file with genotype data. The second column has both alleles for a particular genetic variant concatenated, as below. rs969931 CA 1.000 2.000 2.000 2.000 2.000 2.000 1.000 ...
3
votes
3answers
133 views

awk + print lines from the first line until match word

I want to print all lines from file until the match word please advice how to do that with awk for example I want to print all lines until word PPP remark the first line chuld be diff from AAA ( ...
0
votes
0answers
31 views

Extracting trace information using gawk

I am new to awk programming and am using gawk to extract trace information from a mrt file in order to use it further for analysis. I have successfully been able to extract trace information from a ...
0
votes
2answers
46 views

Substituting \ for \\ in column

I exported a column of thousands of salts from Mysql for hashcat. Every instance of the character \ was replaced with a double character \\ in the exported column. Is there a way to either sed or awk ...
0
votes
4answers
60 views

sed remove last space only on end of line,combined with awk

I have those line Siouxsie Sioux Siouxsie Sioux ... Sylvia Tobias Sylvia Tobias ... Sydney Urshan Sydney Urshan ... Club Drummer (uncredited) Club Drummer (uncredited) ... ...
0
votes
1answer
37 views

Issue finding lines using grep in UNIX [closed]

I am trying to use a .txt file with around 5000 patterns (spaced with a line) to search through another file of 18000 lines for any matches. So far I've tried every form of grep and awk I can find on ...
1
vote
3answers
166 views

sort CSV by number of column in rows?

I have multiple CSV files with many records. The total number of rows should be 134. I have many files, and each rows has its own number of columns (from 15 to 200). I need to sort them according to ...
1
vote
2answers
67 views

Compare and print data from different text files to one in Shell

How can I compare and print data from different text files to one in Shell. I have captures NAS details of three different boxes using SSH, now I need to combine all the three text files to one file ...
6
votes
7answers
493 views

Command line tool to “cat” pairwise expansion of all rows in a file

Suppose I have a file (call it sample.txt) that looks like this: Row1,10 Row2,20 Row3,30 Row4,40 I want to be able to work on a stream from this file that is essentially the pairwise combination of ...
3
votes
2answers
200 views

Why does $var give the value of $0?

I have written a very simple awk script that reverses every word of a file-: awk ' { for (i=1;i<=NF;i++) { x="" for(j=length($i);j>0;j--) x=x substr($0,j,1); print x }}' file1 The contents of ...
0
votes
0answers
38 views

awk - how does the for loop work when counting words? [duplicate]

I have got the following awk script from here that counts the frequency of the words in a file-: # Print list of word frequencies { for (i = 1; i <= NF; i++) freq[$i]++ } END { ...
0
votes
2answers
53 views

Read file and find all occurances and generate hash for the content in between the occurance

I have a file like this : 1 Record|1111|ABC 2 text in between for record 1 3 text in between for record 1 4 Record|2222|XYZ 5 text in between for record 2 6 Record|3333|XYZ 7 text ...
3
votes
1answer
79 views

How do I use awk to create an index of words in file?

I have a problem with my homework I need to create a shell script using awk. The script will output only the words in the file in an alphabetical order, and after the word is : after that a space then ...
1
vote
3answers
56 views

Merging multiple rows into a single one using awk

I'm working with a very large data set in the format: chr1 45162 . . C T chr1 45162 . . C T chr1 45162 A . . T chr1 45162 . . C T chr1 45257 A . . T chr1 45257 A . . T chr1 45413 A . . T chr1 46844 ...
3
votes
3answers
144 views

Split in awk not not printing array values

I have a string tstArr2 which has the following content '3 5 8' Now in awk I want to parse a flat file test my array which array is better array INDIA USA SA NZ AUS ARG GER BRA US AUS INDIA ENG ...
1
vote
3answers
46 views

making 4 out of 1 file with awk

i have large list - text file with 1 column of numbers (length=14). Numbers have 4 difrent prefixes 00001-00004. how do i split 1 list to 4 diffrend files. 1 file shoud contain list of numbers with ...
1
vote
2answers
50 views

Save AWK FNR as a Bash variable to continue search from the line

I'm trying to get to run this on a sorted file. This returns the last line which is less than or equal to the given value comparing the first 9 characters. This would be done multiple times and VALUE ...