mpirun fails to acknowledge my
$PATH. The program
PyroDist, that I have in
$ PyroDist Can't find asked option -in PyroDist - pairwise distance matrix from flowgrams -in string flow file name -out stub out file stub Options: -ni no index in dat file -rin string lookup file name
And running it with
mpirun and full path works too:
$ mpirun -np 4 ../bin/PyroDist -in C005.dat -out foo 0: Read data 0: Broadcast data 0: Broadcast flows nN=2094 nM=360 nSize=753840
But this fails:
$ mpirun -np 4 PyroDist Missing: program name Program PyroDist either does not exist, is not executable, or is an erroneous argument to mpirun.
Since I am going to use a complex set of workflows it is not feasible to use full paths. Any ideas?
(openmpi 1.2.7 on Linux 2.6.32)